PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016468627.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 183aa    MW: 20394.6 Da    PI: 10.126
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016468627.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000414870123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k+F++   L  H  +H
  XP_016468627.1 48 FECKTCNKRFPSFQALGGHRASH 70
                    89**********99999998887 PP

2zf-C2H214.40.0001192114123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg+ Fs    L  H+r+H
  XP_016468627.1  92 HECSICGMEFSLGQALGGHMRRH 114
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0754870IPR015880Zinc finger, C2H2-like
PfamPF139128.7E-134872IPR007087Zinc finger, C2H2
SuperFamilySSF576674.1E-948114No hitNo description
PROSITE profilePS5015710.0344875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-489115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.06792114IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.11892119IPR007087Zinc finger, C2H2
PfamPF139121.3E-992117IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MNAMKRSREA DLQVEAEAMA NCALMLLSRL NNNNNTTTSI DRDYHNGFEC KTCNKRFPSF  60
QALGGHRASH KRPRLLTGAG DFLVQSKKNK MHECSICGME FSLGQALGGH MRRHRDEINK  120
TSTAAGKTIV SVVEKKIIPV LKKSNSSKRV FCGLDLNLTP DVDVDLKLWP TAPVSSPILR  180
CFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009773332.11e-136PREDICTED: zinc finger protein ZAT12-like
RefseqXP_016468627.11e-136PREDICTED: zinc finger protein ZAT12-like
SwissprotQ424101e-34ZAT12_ARATH; Zinc finger protein ZAT12
SwissprotQ9SLD41e-34ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLO220845e-89O22084_PETHY; ZPT2-12
STRINGPGSC0003DMT4000401432e-81(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-35C2H2 family protein